BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012A08LP1|AL426304
(505 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 744 0.0
>3x_Contig1174
Length = 6106
Score = 744 bits (357), Expect = 0.0
Identities = 450/504 (89%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 3 gctcccgccatatcttattgtatcattatcgacaccacgcttattttactcgtctttatc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354 gctcccgccatatcttattgtatcattatcgacaccacgcttattttactcgtctttatc 5413
Query: 63 ctctaactttyatstcttggcatctmattatgtmccatcaawctgtaamaaamtycttga 122
|||||||||| || ||||||||||| ||||||| ||||| | ||||| || | |||||
Sbjct: 5414 ctctaacttttatgtcttggcatctaattatgtaccatcgatctgtatctaaattcttga 5473
Query: 123 agagaccacctaaataamacttggmtctctaaymmmcmmmacamatacataasaccgaac 182
|||| || ||| || | |||||| ||||||| | ||| |||||||| | |||||
Sbjct: 5474 agagtccgcctttatgaaacttggatctctaataaacaaaacaaatacataagaacgaac 5533
Query: 183 cttaamagacacaaaccgaccaamatmgcggacagtttcggtaggcgaaggtatccatga 242
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 5534 cttaaaagacacaaaccgaccaaaatagcggacagtttcggtaggcgaaggtatccatga 5593
Query: 243 cccagtttmggatatymyccacmgattctycgttttctaccccttcactgggagacacgt 302
||||||| |||||| |||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 5594 accagtttaggatattatccacagattcttcgttttctaccccttcactgggagaaacgt 5653
Query: 303 ttgactttgttcccttggacactggttatycttyctgcgatgaccttgayctggtatact 362
||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 5654 ttgactttgttcccttggacactggttattctttatgcgatgaccttgatctggtatact 5713
Query: 363 ccaacgtattaccggtmgttttcyytgcgtacattactgagcccaggttcagamggaagt 422
||||||||||| ||| ||||| ||||||||||| |||||||||||||||| ||||||
Sbjct: 5714 ccaacgtattaaaggtagttttatttgcgtacattaatgagcccaggttcagaaggaagt 5773
Query: 423 ggaaacgngtaggtt-caatgtgaattctcaaaggctacgagtgaagggtgcgagccatg 481
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 ggaaacgggtaggttccaatgtgaattctcaaaggctacgagtgaagggtgcgagccatg 5833
Query: 482 acaatggtagtaatabattatcaa 505
||||||||||||||| ||||||||
Sbjct: 5834 acaatggtagtaatagattatcaa 5857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.44 0.721 1.36
Gapped
Lambda K H
1.44 0.721 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1188
Number of Sequences: 1807
Number of extensions: 1188
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 505
length of database: 10,358,551
effective HSP length: 16
effective length of query: 489
effective length of database: 10,329,639
effective search space: 5051193471
effective search space used: 5051193471
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.2 bits)
S1: 11 (23.4 bits)
S2: 48 (100.5 bits)